PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P05350_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 451aa    MW: 49300.5 Da    PI: 5.7659
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P05350_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.5e-13296342455
                            HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                            +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  GSMUA_Achr8P05350_001 296 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYITELQ 342
                            799***********************66......*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.5E-4036197IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.13292341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.34E-15295346No hitNo description
SuperFamilySSF474592.75E-19295357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-19296355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-10296342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-17298347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.0043386447No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MALAVLGHQA FDYLNARHAA SSDGHLTAVG GGDADLQTKL QDLVEGPGSV AWAYAIFWQI  60
SRSDSDELVL GWGDGHCIET GDEEEEEEGC GSRRNPLDGA HQKMRKRMYF LASMYFSFPK  120
GEDAPGRALE SGKYIWISEA VLASPACSNH YVRAFLARTA GFRTIIFIPF ESGVLELGSV  180
DPVPESFEAL YMIRSLFGHG LSKGEAAPGE KTDENNGPQA LPRPLPPSGQ IDFSSAAAAA  240
ANPAPAGVLI GRAGAVDSEL SDVEAPCKEH KPGGTEERRP RKRGRKPANG REEPLNHVEA  300
ERQRREKLNQ RFYALRAVVP NISKMDKASL LGDAISYITE LQKKLKEMEA EREMWGDPSR  360
VDHKRPPPHC PEIDIQTAQD EVIVRVNCPL DRHPVSQVIQ ALKDSQIDVV DSKVAATNDS  420
VLHTFVVKSP AAEQLTKEKL IAALAHEFRA T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A8e-17361979192Transcription factor MYC3
4rs9_A8e-17361979192Transcription factor MYC3
4rqw_B8e-17361979192Transcription factor MYC3
4rqw_A8e-17361979192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1277285RRPRKRGRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009412249.11e-146PREDICTED: transcription factor bHLH13-like
RefseqXP_009412250.11e-146PREDICTED: transcription factor bHLH13-like
RefseqXP_009412251.11e-146PREDICTED: transcription factor bHLH13-like
SwissprotQ9ZPY81e-114AIB_ARATH; Transcription factor ABA-INDUCIBLE bHLH-TYPE
TrEMBLM0TMT80.0M0TMT8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P05350_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73852944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.12e-82bHLH family protein